Index

_

__len__() (metacast.event_handling.event_queue._EventQueue method) (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method) __repr__() (metacast.event_handling.event_queue._EventQueue method) _check_string_in_list_strings() (in module metacast.metacaster) _collection_of_strings() (in module metacast.metacaster) _dimensions (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) _event_names_checker() (metacast.event_handling.event_queue.EventQueue method) (metacast.event_handling.EventQueue method) _EventQueue (class in metacast.event_handling.event_queue) _foi_population_focus (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

_format_sample() (in module metacast.sensitivity_analyses.lhs_and_prcc) _InfectionBranch (class in metacast.infection_seeding) _instantaneous_transfer() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method) _is_iterable_of_unique_elements() (in module metacast.metacaster) _is_set_like_of_strings() (in module metacast.metacaster) _nested_dict_values() (in module metacast.metacaster) _seed_branches() (metacast.infection_seeding.MultinomialSeeder method) (metacast.MultinomialSeeder method) _subpop_infected_interaction() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method) _subpop_model (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) _unionise_dict_of_lists() (in module metacast.metacaster)

A

all_states_index (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

B

BaseEvent (class in metacast.event_handling) (class in metacast.event_handling.events)

branches (metacast.infection_seeding.MultinomialSeeder attribute) (metacast.MultinomialSeeder attribute)

C

calculate_fois() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method) calculate_prcc() (in module metacast.sensitivity_analyses) (in module metacast.sensitivity_analyses.lhs_and_prcc) calculate_weighting() (metacast.infection_seeding._InfectionBranch method) change_event_factor() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1]

change_event_proportion() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1] change_event_value() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1] ChangeParametersEvent (class in metacast.event_handling) (class in metacast.event_handling.events) coordinates_to_subpop_suffix() (metacast.MetaCaster static method) (metacast.metacaster.MetaCaster static method)

D

determine_lh_sample_size() (in module metacast.sensitivity_analyses) (in module metacast.sensitivity_analyses.asses_lh_sample_size) dimensions (metacast.MetaCaster attribute) (metacast.MetaCaster property) (metacast.metacaster.MetaCaster attribute) (metacast.metacaster.MetaCaster property)

E

earliest_event_time (metacast.event_handling.event_queue._EventQueue attribute) (metacast.event_handling.event_queue._EventQueue property) EventQueue (class in metacast.event_handling) (class in metacast.event_handling.event_queue)

events_at_same_time (metacast.event_handling.event_queue._EventQueue attribute) events_at_same_time() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1] exposed_states_indexes (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

F

factor (metacast.event_handling.events.ValueFactorProportionChangeEvent property) (metacast.event_handling.ValueFactorProportionChangeEvent property)

foi_population_focus (metacast.MetaCaster property) (metacast.metacaster.MetaCaster property)

G

get_event_names() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1] get_indexes_of_coordinate() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method)

get_state_index_dict_of_coordinate() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method)

I

infected_states_indexes (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) infectious_and_asymptomatic_states (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) infectious_and_symptomatic_states (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

infectious_asymptomatic_indexes (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) infectious_symptomatic_indexes (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) integrate() (metacast.MetaCaster method), [1] (metacast.metacaster.MetaCaster method), [1]

L

len (metacast.event_handling.event_queue._EventQueue attribute)

lhs_prcc() (in module metacast.sensitivity_analyses) (in module metacast.sensitivity_analyses.lhs_and_prcc)

M

make_event_a_nullevent() (metacast.event_handling.BaseEvent method) (metacast.event_handling.ChangeParametersEvent method) (metacast.event_handling.events.BaseEvent method) (metacast.event_handling.events.ChangeParametersEvent method) (metacast.event_handling.events.ParametersEqualSubPopEvent method) (metacast.event_handling.events.TransferEvent method) (metacast.event_handling.events.ValueFactorProportionChangeEvent method) (metacast.event_handling.ParametersEqualSubPopEvent method) (metacast.event_handling.TransferEvent method) (metacast.event_handling.ValueFactorProportionChangeEvent method) make_events_nullevents() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1] metacast module metacast.event_handling module metacast.event_handling.event_queue module metacast.event_handling.events module metacast.infection_seeding module

metacast.metacaster module metacast.sensitivity_analyses module metacast.sensitivity_analyses.asses_lh_sample_size module metacast.sensitivity_analyses.lhs_and_prcc module MetaCaster (class in metacast) (class in metacast.metacaster) module metacast metacast.event_handling metacast.event_handling.event_queue metacast.event_handling.events metacast.infection_seeding metacast.metacaster metacast.sensitivity_analyses metacast.sensitivity_analyses.asses_lh_sample_size metacast.sensitivity_analyses.lhs_and_prcc MultinomialSeeder (class in metacast) (class in metacast.infection_seeding)

N

not_empty() (metacast.event_handling.event_queue._EventQueue method), [1]

O

ode() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method)

P

parameter_names (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) parameters (metacast.infection_seeding.MultinomialSeeder attribute) (metacast.MetaCaster property) (metacast.metacaster.MetaCaster property) (metacast.MultinomialSeeder attribute) ParametersEqualSubPopEvent (class in metacast.event_handling) (class in metacast.event_handling.events) poptop() (metacast.event_handling.event_queue._EventQueue method), [1] population_terms (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) prep_queue_for_sim_time() (metacast.event_handling.event_queue._EventQueue method), [1]

process() (metacast.event_handling.BaseEvent method), [1] (metacast.event_handling.ChangeParametersEvent method), [1] (metacast.event_handling.events.BaseEvent method), [1] (metacast.event_handling.events.ChangeParametersEvent method), [1] (metacast.event_handling.events.ParametersEqualSubPopEvent method), [1] (metacast.event_handling.events.TransferEvent method), [1] (metacast.event_handling.events.ValueFactorProportionChangeEvent method) (metacast.event_handling.ParametersEqualSubPopEvent method), [1] (metacast.event_handling.TransferEvent method), [1] (metacast.event_handling.ValueFactorProportionChangeEvent method) proportion (metacast.event_handling.events.ValueFactorProportionChangeEvent property) (metacast.event_handling.ValueFactorProportionChangeEvent property)

Q

queue (metacast.event_handling.event_queue._EventQueue attribute)

R

reset_event_queue() (metacast.event_handling.event_queue.EventQueue method), [1] (metacast.event_handling.EventQueue method), [1] results_array_to_df() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method)

run_samples_in_parallel() (in module metacast.sensitivity_analyses.lhs_and_prcc) run_samples_serially() (in module metacast.sensitivity_analyses.lhs_and_prcc) run_simulation() (metacast.event_handling.event_queue.EventQueue method) (metacast.event_handling.EventQueue method)

S

seed_infections() (metacast.infection_seeding._InfectionBranch method) (metacast.infection_seeding.MultinomialSeeder method), [1] (metacast.MultinomialSeeder method), [1] select_dict_items_in_list() (in module metacast.metacaster) set_seed() (metacast.infection_seeding.MultinomialSeeder method) (metacast.MultinomialSeeder method) set_structure() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method) shape (metacast.MetaCaster property) (metacast.metacaster.MetaCaster property) state_index (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) subpop_coordinates (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

subpop_interaction_terms (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) subpop_model (metacast.MetaCaster property) (metacast.metacaster.MetaCaster property) subpop_suffixes (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) subpop_transfer() (metacast.MetaCaster method) (metacast.metacaster.MetaCaster method) subpop_transfer_dict (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) subpop_transition_params_dict (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

T

times (metacast.event_handling.event_queue._EventQueue attribute) (metacast.event_handling.event_queue._EventQueue property) total_parameters (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) total_states (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

total_subpops (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute) TransferEvent (class in metacast.event_handling) (class in metacast.event_handling.events) transmission_terms (metacast.MetaCaster attribute) (metacast.metacaster.MetaCaster attribute)

U

undo_make_event_a_nullevent() (metacast.event_handling.BaseEvent method) (metacast.event_handling.events.BaseEvent method) (metacast.event_handling.events.ValueFactorProportionChangeEvent method) (metacast.event_handling.ValueFactorProportionChangeEvent method)

V

value (metacast.event_handling.events.ValueFactorProportionChangeEvent property) (metacast.event_handling.ValueFactorProportionChangeEvent property)

ValueFactorProportionChangeEvent (class in metacast.event_handling) (class in metacast.event_handling.events)